Quote from Reddit

[The Matrix] was a good movie, but the Wachowskis could have made it a much better mind fuck.

Mind fuck #1:

Smith explains to Neo that Morpheus has it all wrong. Humans made the world uninhabitable and the robots are saving the human race in the only way they can. That business of harvesting humans for energy doesn’t even make sense. Someday, the world will be habitable again and the human race can come out of its pods.

Smith doesn’t hate humans, he just hates Morpheus and his gang of vandals because they’re interfering with the work of saving the human race. The robots look at Morpheus the way doctors look at anti-vaxxers during a measles epidemic.

Now Neo has to figure out who’s telling the truth.

Mind fuck #2:

At the end of the second movie, Neo uses his magic matrix powers to knock down some robots, even though that shouldn’t be possible outside the matrix. This is never explained.

My explanation: Zion is just another matrix. One created to house the humans who are too paranoid to accept life in the main matrix. This is hinted at by Smith, who points out that the original matrix was too nice, and people didn’t believe it. (“We lost entire crops.”). Actually, that first “paradise” matrix still exists, and most people still live there. Neo’s matrix only houses that portion of humanity that couldn’t handle paradise. Zion houses the people who can’t even handle the mundane matrix.

So the third movie should have been about Neo solving the riddle of the Zion matrix. I wonder if the Wachowskis originally had this in mind, but chickened out.capilot, /r/AskReddit/

The original thread is here.

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